Rob,
If you can scan the pages, or find them online and post them up here, it would help aleviate confusion. The upper fairing covers are hard to come by, you'll pay big for them in good shape.
I have a couple of the factory stereo inserts for the top left side fairing cover. I also believe that I have the clutch cover your needing. The black insert you talk about, is this the louvered vent, the rubber cushion, or the 1/4 moon piece that goes between the steering head and the side of the panel?
If we can narrow down what you need with some pics or diagrams we can get you pointed in the right direction