Bike is back together and running like new. It was the speedometer. I gave up and took it to a Yamaha dealer in Seymour, In. I talked to service mech, and he said he had one other issue like this and it took him two days to trouble shoot. he finally called Yamaha and they told him to replace the speedometer and that fixed it. I really didn't want to pay for a new speedometer and labor cause it was $900. I found a used one on Ebay and installed it today and yes I am back on the road. Only thing I can figure as to why the bike ran ok prior to me disconnecting things is the signal that the ECU or ignitor box was looking for was still being sent til I started disconnecting things. Anyway my hotrod is running great again and I am happy. Thanks to all for all your ideas.